Release notes

Recently published apps 

We published MSIsensor-pro v0.1.2 in our Public Apps gallery: 

• MSIsensor-pro v0.1.2 toolkit (an updated version of MSIsensor): 

• MSIsensor-pro scan - a tool for cataloging homopolymers and miscrosatelites sites in the reference genome. It prepares reference for MSIsensor-pro msi. 

• MSIsensor-pro msi - a tool for somatic microsatellite changes detecting and scoring. Designed to work with paired tumor-normal data. 

• MSIsensor-pro baseline - a preprocessing tool for microsatellite instability (MSI) detection using only tumor sequencing data. 

• MSIsensor-pro pro - a tool for evaluating microsatellite instability (MSI) using tumor only data 

We also published the following ASCAT 3.1.2 tools:

• ASCAT prepareTargetedSeq prepares SNP references for ASCAT processing of targeted sequencing data.  

• ASCAT prepareHTS prepares sequencing data (WGS, WES or targeted) for ASCAT. ASCAT infers tumor ploidy, purity and allele-specific copy number profiles. 

Recently updated apps 

We updated the following apps from the MSIsensor v0.6 toolkit: 

• MSIsensor scan - a tool for cataloging homopolymers and miscrosatelites sites in the reference genome. It prepares reference for MSIsensor msi. 

• MSIsensor msi - a tool for somatic microsatellite changes detecting and scoring. Designed to work with paired tumor-normal data.