Release notes
Recently published apps
We have just published the following GATK 4.4.0.0 tools:
GATK IndexFeatureFile used for indexing of provided feature files.
GATK MergeVcfs - used for combining multiple variant files.
GATK VariantEval BETA - used for evaluating variant calls.
GATK FilterMutectCalls - used to filter somatic SNVs and indels called by Mutect2.
We have also published Minimac 4 4.1.2, which is a tool for imputing genotypes.