Release notes

Recently published apps

The following apps were published in CWL1.x:

• SRA Toolkit 2.10.8 - NCBI’s collection of tools and libraries for accessing data in Sequence Read Archives format (SRA).

• SRA Download and Set Metadata a workflow that allows for downloading full SRA datasets and populating any metadata information that goes with the dataset

• AnnotSV 3.0.7 - structural variant annotation and raking tool.

• IsoformSwitchAnalyzeR 1.12.0 - a tool for differential splicing analysis, it performs statistical identification of the isoform switching while comparing two sample groups.

• DRIMSeq 1.16.1 - performs differential transcript usage (DTU) analyses using Dirichlet-multinomial generalized linear models.

• DEXSeq 1.36.0 - toolkit for testing differential exon usage in comparative RNA-Seq experiments.

• Differential Exon Usage with DEXSeq 1.36.0 - a workflow constructed out of DEXSeq tools, meant for a comprehensive differential splicing analysis.